rs48667167 SNP Detail

Summary

• ID
  rs48667167
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:84340450 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCATGGAGA GGCAAAGAAA
  AATATACCTC TGTGAGTACT AGGTCAGCCT GGTGGATATA GCAAGTTCCA GGGTGACCAG
  AGCTAAGTAG TGAAACCCAG GGCCAAATAA AATAAAGCTA AGCCTGCTGT TCGAAACCAG
  AGCAGAACAG AAGGTCCCTA CCCAGGGCCT AAGGGTGTTT TTGAGGCACA TTCAACCCAT
  Y
  CAAAATTTAT ATTTAAGGTT GGAGTAATGA TTCAGCAGTT AAGAGCACTT ACTGCTCTTG
  TAGTGGTCTT AGGTTGGGTT CCCAGCATCT GCGTGGTGGC TCACAACTGT CAAAACACTC
  ATACACTTGA AAATAAATCT TTAAAGCCAG GTGTGGAGAC TCACACCTTT AAACTCAATA
  CTAGGGAGGC AGAGGCAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145209021	ENSMUSSNP521518	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48667167					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:84340450 () rs orientation: forward

Symbol	Name	Function Class
2610206C17Rik	RIKEN cDNA 2610206C17 gene	within coordinates
Cpgi19383	CpG island 19383	733 bp distal
Rr400423	regulatory region 400423	1127 bp downstream
Rr650632	regulatory region 650632	1488 bp distal
Rr650633	regulatory region 650633	1296 bp distal
Rr650634	regulatory region 650634	795 bp distal
Tssr73444	transcription start site region 73444	1421 bp upstream
Tssr73445	transcription start site region 73445	1408 bp upstream
Tssr73446	transcription start site region 73446	1343 bp upstream
Tssr73447	transcription start site region 73447	1324 bp upstream
Tssr73448	transcription start site region 73448	1303 bp upstream
Tssr73449	transcription start site region 73449	1278 bp upstream
Tssr73450	transcription start site region 73450	1251 bp upstream
Zfand6	zinc finger, AN1-type domain 6	1226 bp upstream