rs48668540 SNP Detail

Summary

• ID
  rs48668540
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:80725004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGACCCTG TCTCAGAAAA
  CAATAAAAGC CTATAATCAC AAGGCAGCGG GTGGCAAAAG TGTCTCATTT GGAGCTGAGC
  TGCTGGGCTG GAGAGTGAGT TCACCCTCCC GGCAAGTCAG GGTTGGGGCC TGAGCGGTGA
  CAAGAGAAGC TGATCCGGTC TAGCATGTAT GGGGAGAAGA GATGAGGAGT GAAGGCTTGC
  Y
  GCCTGTTAGT GCCTAAGTAG ATGTGGATGT TGGGGTGAGG GTCAGGTGGA CCCAGCATCC
  TGAGAACCAG AAGAGGAGAT GGTTTTTAGT CTCCTGGCTC AAAGTGGCTG CTGGGGGTCC
  GGCGCTCTCA CCTGCTTTTC TCTGTTGCCC TGTGGGCAGT GGTGAAGCCA GAGGTCCTTC
  AGAAAGCCAC GGTGGAATTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61290364	NES16912763	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48668540					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61290364	NES16912763	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80725004 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1917	CpG island 1917	588 bp distal
Cpgi1918	CpG island 1918	984 bp proximal
Tmprss9	transmembrane protease, serine 9	within coordinates