rs48669315 SNP Detail

Summary

• ID
  rs48669315
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:90789048 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACACACAA GGTTTCAGAG
  TCACAGAAAT GGTGTGGCAG ACTGCACCTG TCCACTTCAA CTGTGACCAG ATGCCTGAGG
  TGTGAGTGAG TGGTAGTCAG CCTTGCATGA CTGCCTGCCC CTGGGTAGAA TTGTAAGACA
  GGACCACCCA ACAATCTACA TGTTCAGGCT GAGGCTGACA TAGAGCATTT CATAGCCAGT
  Y
  TCTGGACCCA TGTCCCCATC TCATCCCTAC AGTCTAGGAG AAGCAAACGC CTCCAGGGCT
  GGTTCCAGAA ATTTCCTATC TAGGACTTTG CCTCATAGAC TGGAAAATTC CAACCTGCAG
  GCTGATAGGG ATATTCAGGC AGAGTGTCTC TGTCTTCCAA CCTGTGGCCA TCTGTCCCCT
  AGGCAGGAGC ATAACAACAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60908463	NES15947989	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48669315					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60908463	NES15947989	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:90789048 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17728	CpG island 17728	1710 bp distal
Iqsec1	IQ motif and Sec7 domain 1	within coordinates
Rr634330	regulatory region 634330	1954 bp distal
Rr634331	regulatory region 634331	1453 bp distal
Rr634332	regulatory region 634332	1834 bp distal
Rr634333	regulatory region 634333	155 bp proximal
Tssr62052	transcription start site region 62052	1993 bp upstream
Tssr62053	transcription start site region 62053	1972 bp upstream
Tssr62054	transcription start site region 62054	1906 bp upstream
Tssr62055	transcription start site region 62055	1847 bp upstream