rs48669577 SNP Detail

Summary

• ID
  rs48669577
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:82407846 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGTAGGCA ATAAAAATAT
  GTTTGAAACA GTCTAGAGCA TTAAACTTGA TCCTAGAAGG CAAAAATTGC AAATTTGTGT
  TCAGGTCCAG AGCTATATTA AGTTTATTGT TTCATAACCA GTCCAGTCTA TTTCAGTGTA
  TTGTTTTCTG CACAAGGTCT CCTTGTAACC ATGCATCAGA ATAGACTGTT GCCAGAATCT
  Y
  AAAGTGTCAG AGATGGAGTC TTGATTACTT GCTTCCTGCC CCAGGGATTC TTGCTGTTAG
  GATTGTCATT AAACAAAGCA GCCTCCCTGG CATTGTGTTC TGATAAACAA TTTGCACCTT
  GGTAAACTGA TTAATGGAAT GAGTTTGTTT TGATAATTGA TCCTTGACTT GTATTTTAAA
  GGACAGCAAA ACCTTAAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61858014	NES17782365	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48669577					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61858014	NES17782365	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:82407846 () rs orientation: forward

Symbol	Name	Function Class
Gm48155	predicted gene, 48155	767 bp downstream
Gm59879	predicted gene, 59879	within coordinates
Rr277316	regulatory region 277316	46 bp distal