rs48670850 SNP Detail

Summary

• ID
  rs48670850
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171575731 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGGT TTATGTTCCA AAATTACCAT
  K
  TACTAATTGT AGAACTCTAG GAAGA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120002640	PARCsnp_1.15397	PARC_SEQ	INBRED	f	SNP		T	G
ss120005016	PARCsnp_1.04776	PARC_SEQ	INBRED	f	SNP		T	G
ss146173616	ENSMUSSNP328983	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss320120644	CHEV_1_173678294	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs48670850					SNP	G	T	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171575731 () rs orientation: forward

Symbol	Name	Function Class
Rr423388	regulatory region 423388	133 bp proximal