rs48671257 SNP Detail

Summary

• ID
  rs48671257
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:85941283 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGCATTCAA AATATGAGCC TATGGGGGCC ATTTCTCATT
  CAAACCAACC CACCTTCCAT CGAGAGCCTA CTCTATAAAG CCAGCTCAGA TCATAAAGCC
  K
  TTCTGAGGGC AGAGCCCTTC AAAGTAATCA CGTGCCACAT GGGTGTACTG GGGATTAAGC
  TTGCAATGCA GGGACTCTGG AGACACACTT TAACTTCAG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148282852	ENSMUSSNP6870053	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48671257					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:85941283 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7499	CpG island 7499	869 bp proximal
Gm41375	predicted gene, 41375	within coordinates
Gramd4	GRAM domain containing 4	613 bp upstream
Rr507410	regulatory region 507410	401 bp distal
Rr507411	regulatory region 507411	161 bp proximal
Rr507412	regulatory region 507412	1155 bp proximal
Rr507413	regulatory region 507413	1171 bp proximal
Rr507414	regulatory region 507414	1656 bp proximal
Tssr132563	transcription start site region 132563	1664 bp upstream
Tssr132564	transcription start site region 132564	1714 bp upstream
Tssr135780	transcription start site region 135780	1493 bp downstream