rs48671399 SNP Detail

Summary

• ID
  rs48671399
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:50298138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGGAGGTTA TTCATGGGCT AGATTTCCAC TCATCAAAAC
  TGTCATAGTT ACAACTGTTT CTGAGTGCCA GCTCTATCAA CAACAGAGAC AACTACTATG
  M
  CTCAAAATAT GACATCATTT CCCATGGTGA GCAGTTAATA ACCTTGATTC AAGTTGACAA
  TATTGAGTGT CTTAGTCAGG GTTTCTATTC CTGGACAAG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss139454963	ENSMUSSNP6590086	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		A
ss324615146	CHEV_14_50680356	CHEVERUD	SCREENING_POP	f	SNP			C		A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs48671399					SNP	C	C	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:50298138 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6404	CpG island 6404	999 bp proximal
Gm37194	predicted gene, 37194	679 bp upstream
Rr491685	regulatory region 491685	376 bp proximal
Rr491686	regulatory region 491686	1926 bp proximal
Rr491687	regulatory region 491687	1986 bp proximal
Tssr125363	transcription start site region 125363	676 bp upstream
Tssr125364	transcription start site region 125364	1599 bp upstream