rs48671588 SNP Detail

Summary

• ID
  rs48671588
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:39302590 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATACCTAG AAAATTTTTG
  AAGTGGCCAT TCTGAAATCC AAGGTTTGTG TGAAATAATA GTTACATTAG CTTCTGTATC
  CACCACATCT TCTATTTAAG TATCATAGCA AATTTAATTT TGGAGTCTGA TGATTAACAT
  CTGTTTTCAA GGACATATAT TTTCCTGAAT TTCAAAATTC TTCTGATCTT TCAACTGGAA
  Y
  GGCTTTATCT CTGATATAGG GAAACAGAAA CAGTTGAGCA ATTCCATCAC CAGTGTTAAA
  TTGCATATCT TAAAAAAAAA AAAAAACTTA GGCCATTTTT CAATTTCTCC CTTGAAATCT
  CCATCTATAA TTTGTGGATG CACAGTACAT CCTTGGGAAG TCAAATTATA TTTTCCAAAG
  ACCATCCCTA CTGTTTGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss60312166	NES15803716	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs48671588					SNP	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60312166	NES15803716	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:39302590 () rs orientation: forward

Symbol	Name	Function Class
Cyp2c29	cytochrome P450, family 2, subfamily c, polypeptide 29	within coordinates
Tssr156337	transcription start site region 156337	1334 bp upstream
Tssr156338	transcription start site region 156338	1368 bp upstream
Tssr156339	transcription start site region 156339	1393 bp upstream
Tssr156340	transcription start site region 156340	1493 bp upstream
Tssr156341	transcription start site region 156341	1542 bp upstream