rs48672204 SNP Detail

Summary

• ID
  rs48672204
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127294070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAAGACAC AAATGGTCCT
  GCAACCCAGA TGGACAAATC CTCAGAAATA TCACTAATTA TTGATGCTCT TGGGTCCCAA
  ATTTGATCAT CTGTAGATCT TATTGATTTT TACAGTTCAA TCATATCTGC ATTTTCTCTA
  TTCTTCTCAT TCACACCACC ATCATGGCTC AACATTCTAA TACACACAGC ATAAAACCGG
  S
  CTGCATGTTC GCACCTGTGC ACTGCACAGC TTGAAACAGA TCTAGAAAGA GAAATGTCGT
  GTCTGGGACA CGACAGCCTG CCCTGCCTTT CCCATCTTCC TTACTGCATC CCTTCTGTGC
  ACTTTGCTCC TCTTGATGGG ATTTGTATTC ACTTGTTTAT CCTTTGAGGC TCACCTAGGA
  CTTGAAGGCA GAGTCCACGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss135865143	ENSMUSSNP6085793	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320954703	CHEV_3_127203339	CHEVERUD	SCREENING_POP	f	SNP		G	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs48672204					SNP	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127294070 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	1071 bp upstream
Cpgi13791	CpG island 13791	1012 bp distal
Gm64355	predicted gene, 64355	1831 bp downstream
Rr584800	regulatory region 584800	930 bp distal
Tssr35576	transcription start site region 35576	1383 bp upstream
Tssr35577	transcription start site region 35577	1350 bp upstream
Tssr35578	transcription start site region 35578	1328 bp upstream
Tssr35579	transcription start site region 35579	1284 bp upstream