rs48672253 SNP Detail

Summary

• ID
  rs48672253
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:14528590 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCCTCCAA GGCCCCAAAG
  GCTTTTTGTT GCTTTGCTCT GCTTTGCTTT ATTTCTTGAG GCAGGCTCTC TGTGTAGCCT
  AGGCTGGCCT GCAATTCATA CAGCCCAGGT AACTTCCTAC TTAAGACCTT CCTGCCTCAG
  GCTCACAAGT GTGTCCTTAT TCTTTCTTCA TTTCAAGGCT TCTTGCCTTC TTGGTAGTAA
  R
  ATGGCTACAG GACCACCTGC TGCTTCATTT TCAGAGGTCT TGAGAGGCAA GAAATCTATA
  AGTCTCCTAG CGAGCCTCTG CTCCCGTCCC AGTGAGCTGG GACACATGCC CATTCCTGAG
  TCACTTACTG TGGCTAAAGA AATAAATTTA CCTTGGGGAA AGAATTTTCC TCATCCTGTA
  AGAGACTGAA TCTGGACATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62080634	NES17154311	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	G	G	G	G	G	A	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48672253					SNP	A	G	G	G	G	G	G	G	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62080634	NES17154311	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:14528590 () rs orientation: forward

Symbol	Name	Function Class
Flnb	filamin, beta	within coordinates
Gm62553	predicted gene, 62553	within coordinates
Rr487922	regulatory region 487922	1961 bp distal
Rr487923	regulatory region 487923	371 bp distal
Tssr124220	transcription start site region 124220	465 bp upstream