rs48674166 SNP Detail

Summary

• ID
  rs48674166
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130487055 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTAC AAACAGGCTA TCTTCTTTAT
  A
  AATCTGAATG GTTCATCTCC ATTGT                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss135897806	ENSMUSSNP5692657	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss320966016	CHEV_3_130396324	CHEVERUD	SCREENING_POP	f	SNP		A	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs48674166					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130487055 () rs orientation: forward

Symbol	Name	Function Class
Gm36373	predicted gene, 36373	691 bp upstream
Gm65113	predicted gene, 65113	within coordinates
Rr398016	regulatory region 398016	632 bp upstream
Rr585190	regulatory region 585190	1893 bp distal
Rr585191	regulatory region 585191	1259 bp distal
Rr585192	regulatory region 585192	1849 bp distal
Rr585193	regulatory region 585193	1616 bp distal
Rr585194	regulatory region 585194	720 bp proximal
Rr585195	regulatory region 585195	807 bp proximal
Rr585196	regulatory region 585196	1335 bp proximal