rs48674274 SNP Detail

Summary

• ID
  rs48674274
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:46387092 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTATTGCC TCTGGAGATG
  GGAGATGGGC TGTAGAGAGC TGAGGTTACC CCCCCCCCCC GTGTGTCACT GGGATAATAA
  TGCAAAGGAA ACTGACAGCC AGGAGGGTCT GGGGACCAGC CTGTCCGGGT AGCCAGGAGC
  CATGCTGGCA AGGCATCTGT GCAGGGCAGC CTAGTTCCTG GCTGACTAGT GTTTTGAAGA
  Y
  TGCTTCTGAG TGGGTAGTGG CTCTTGCTAA CTTAATCACC CATTTCAATG GCACCTCTGT
  ATTAGTTGTG ATGAACTTGT CCCATGTCAT GAGAAAAACG GGGCTGACCT TGCCATACTG
  TTTGCTCTGA TCTTGTTTAA GTGTGAGGGA AAGTCCCTGT GCAGAATAGG GGGCACCTGG
  TTTTATGTCA CCTACATGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss60312982	NES15818153	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs48674274					SNP	T	T	T	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60312982	NES15818153	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:46387092 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11002	CpG island 11002	1228 bp distal
Rr406001	regulatory region 406001	1726 bp downstream
Rr548730	regulatory region 548730	1617 bp distal
Rr548731	regulatory region 548731	1891 bp distal
Rr548732	regulatory region 548732	1783 bp distal
Rr548733	regulatory region 548733	1071 bp distal
Rr548734	regulatory region 548734	1029 bp distal
Rr548735	regulatory region 548735	1344 bp proximal
Sufu	SUFU negative regulator of hedgehog signaling	Intron
Tssr156753	transcription start site region 156753	1654 bp downstream
Tssr156754	transcription start site region 156754	1620 bp downstream