rs48674511 SNP Detail

Summary

• ID
  rs48674511
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:59169584 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCACCCAG CCCTGAGGCC
  CTGTGTTTGC GCCCCAGGGT ACATGCAAAG GTTGAAAGAG AGAAGTGATT GTACAGTTGC
  CCTCTGACCT CCACACGTGT ACATCATGTC ATTTGTACAT ACAATAACTC AAAAAGCAGA
  AGTGTGAGAG AAAGCTTATT CCTATATCTT TATGAATGAA TTTTCTGCAT ATTTTCTCAC
  R
  CTGTTAAAAC TATGTTACAT TACTAATTTT TTCCCTTTTG TTTTGCTAGA GACACTTTCT
  CACTATTTGT GACCCAAGCT GGGTTTGAAC TGCTGATTCT TCTGTCTCAG CTTCCTACAT
  GCCTGGATTA CAAACGTGCA AGTTTAAATG GTTTTCGTGT ACTGCACACA CTAAAGTGTG
  GGTGTGTGTG TGTGTGTGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52331678	NES15284307	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48674511					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52331678	NES15284307	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:59169584 () rs orientation: forward

Symbol	Name	Function Class
P4ha1	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	within coordinates
Rr215341	regulatory region 215341	984 bp distal