rs48674818 SNP Detail

Summary

• ID
  rs48674818
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:35114305 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTTTGGTA TAGCTGTGTA
  TGTGTCTCCA GAGTATTTGA GGTAGGAGGG TACTGGTGCT GTCATGAGGG TAATCCTGTT
  GTCCAAGAGA CTGACAGTCT TTTTGATAAA GGCAGCACAG ACAGTAAGAA CCACTGACTA
  GTGAGTCAAA CTCCCCCATC TAGAGTTCTT GCTTATATGA TGATGGTTGA TTGTTTCTGC
  R
  TGCTGTGGCA GGAGACTTTA CCCTTAGGAA AGCTGATTTA CCCAAGACCT AACAGGGAAC
  TGGGAGACAT AATCCCCTTA ATAAGATAAA GCACTTTCAC CTCCCAAATG CTCTTCTCTA
  GATGCTATAG CTTCTAGACC TCACTACTAA ATGGACCTAC GTTTCTGAGT AACTCAAATA
  TTAACTGTTC CTTTCCCCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60718099	NES16346924	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs48674818					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60718099	NES16346924	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:35114305 () rs orientation: forward

Symbol	Name	Function Class
D1Mit243	DNA segment, Chr 1, Massachusetts Institute of Technology 243	379 bp distal
Gm53547	predicted gene, 53547	within coordinates