rs48674890 SNP Detail

Summary

• ID
  rs48674890
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:26499701 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGATTCCAGA GGTCACAGTG GAAGCTACCC AAGGTCTGGT
  CCCATTCTGT GACTCAGGTG GAAATGACAG AGTGGTTGGA GGGCCCTGTC TGGTAGGCAT
  K
  TAAGCATGTG GCTGTTGTCC TCCAATCCCC TCCAACTTCC CTGCAGCCTG GTCTGGGACA
  GACAGCAGGC TGTTTCCCAA CCTCTAGCTA TAACTGGTG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146386133	ENSMUSSNP5269917	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48674890					SNP	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:26499701 () rs orientation: forward

Symbol	Name	Function Class
Gm20532	predicted gene 20532	within coordinates
Gm39772	predicted gene, 39772	482 bp upstream
Gm57466	predicted gene, 57466	within coordinates
Rr48585	regulatory region 48585	within coordinates
Rr372944	regulatory region 372944	570 bp upstream
Tssr16813	transcription start site region 16813	73 bp upstream
Tssr16814	transcription start site region 16814	112 bp upstream
Tssr16815	transcription start site region 16815	999 bp upstream
Tssr23142	transcription start site region 23142	1864 bp upstream
Tssr23143	transcription start site region 23143	1688 bp upstream
Tssr23144	transcription start site region 23144	1616 bp upstream
Tssr23145	transcription start site region 23145	1526 bp upstream
Tssr23146	transcription start site region 23146	1496 bp upstream
Tssr23147	transcription start site region 23147	1428 bp upstream
Tssr23148	transcription start site region 23148	1055 bp upstream
Tssr23149	transcription start site region 23149	1014 bp upstream