rs48676201 SNP Detail

Summary

• ID
  rs48676201
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:98439867 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAATAATCTG AATACAACAG TGTCTGTTGG CTGGGCTTGC
  TCATGCATTA TACCAATGCT GTGAAATTCA AGCTCTGACG CCAAACAGGC TGCACACTGC
  M
  GTTGTTTCCC ACTAGATAAA CTCTTTACAT TCATAATGTA ACTTAGACAC CATGTCTTCA
  GAATTCCAAA TCACAATTTC ATTGTCTTTA GTATCTTAAC                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss63625988	NES17036537	PERLEGEN	MM_PANEL2	f	SNP	A	A	C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs48676201					SNP	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63625988	NES17036537	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98439867 () rs orientation: forward

Symbol	Name	Function Class
Ccnt1	cyclin T1	within coordinates
Rr391179	regulatory region 391179	1797 bp upstream
Tssr132942	transcription start site region 132942	597 bp downstream
Tssr136244	transcription start site region 136244	635 bp downstream
Tssr136245	transcription start site region 136245	1921 bp downstream
Tssr136246	transcription start site region 136246	1986 bp downstream