rs48676212 SNP Detail

Summary

• ID
  rs48676212
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:98156267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGAATTG GCGCGGTTTC
  ACATGATTGG TCCATTTAAA CATCAGCAGC CTGTAACATT TAACTTAGGT CAGAGGGGTA
  GGAGATAGGG AGGCGATGGG CCTGCCCGGG CATGTCCTGG TCTGTTCTGC TATGTTCTCA
  GCCCCAGGTT TCAAAGCTCA CAAACAACTC TTTGGGCTAT TTGACATACA TTACATGAAT
  Y
  ACAGGTCTCA AGTCTTATTT CCTTTCAGAA CAAGCAATAC CTTAGCTCCC CCAGAGCAGC
  CAACATAGGA GGGAATGTAT TTTGGTTGCT TAAATTTTCT TTCGTTCATT TATTTCTTTT
  GAAATTTGTT TATATTTGCA CTATCATTTG CAAATTTTGG ATCACACACA CACAAAGACT
  TTCATGAGTG TTCTTTATTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148453834	ENSMUSSNP6335818	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48676212					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98156267 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7649	CpG island 7649	1203 bp distal
H1f7	H1.7 linker histone	1093 bp upstream
Rr311340	regulatory region 311340	1503 bp distal
Rr391174	regulatory region 391174	within coordinates
Tssr136230	transcription start site region 136230	1074 bp upstream
Tssr136231	transcription start site region 136231	954 bp upstream