rs48676781 SNP Detail

Summary

• ID
  rs48676781
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:63326689 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATGG GTGGGGAGGT CCTGGCAGGA
  S
  GGTCTGGCTT AGCAGTCCAG CTGGT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss146443690	ENSMUSSNP1284936	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48676781					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:63326689 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14370	CpG island 14370	1421 bp proximal
Gm57078	predicted gene, 57078	within coordinates
Rr398307	regulatory region 398307	1664 bp upstream
Rr593544	regulatory region 593544	754 bp proximal
Tssr37559	transcription start site region 37559	1153 bp upstream
Tssr42046	transcription start site region 42046	1541 bp downstream
Tssr42047	transcription start site region 42047	1558 bp downstream
Tssr42048	transcription start site region 42048	1736 bp downstream
Tssr42049	transcription start site region 42049	1762 bp downstream