rs48677188 SNP Detail

Summary

• ID
  rs48677188
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:32971690 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACAAATTT AATGGTAATA
  TATGGCACAT ATATTAAGAT AGTGAAACAC TGTGAGCCAC TTACTTAGAA GCCTGAACAT
  CTAAAAGTGA ACTGTCACCA AGTTGTGTAC TGACAACACG TTAATGATCT ATCTTAAGAT
  CACCTCATAA AGTGATGATT TACAACGTCA GTGACTTTTC CACTGTACAC AGAGGCCTGT
  M
  TGCCAAATGG TTATAGAAGT TTGTGTAAAC AGTGGTATTA TAAGAGATTT GTGTTTTCTT
  TAGCTAGGAT TCTCAGATAT TTTATATGGT GTGCACTATT TTTGCAATTA GATAAAAGAA
  CTCATCCCCA TGATGTGCTC TATAACTTTC AGTATTATTT ATAGATATTA CTGGGTGCTA
  GGGAGATAGA ACAACTGAGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60876558	NES15980437	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48677188					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60876558	NES15980437	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:32971690 () rs orientation: forward

Symbol	Name	Function Class
Chchd3	coiled-coil-helix-coiled-coil-helix domain containing 3	within coordinates
Gm53279	predicted gene, 53279	within coordinates
Gm66358	predicted gene, 66358	297 bp upstream
Rr140002	regulatory region 140002	1711 bp proximal
Tssr60215	transcription start site region 60215	1106 bp upstream
Tssr60216	transcription start site region 60216	292 bp upstream