rs48677625 SNP Detail

Summary

• ID
  rs48677625
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135716350 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    agctaaatt aaaATAATAA TAATAATGTG
  GTGCTGAATG GTTATGGGTT TCAGAAGTTT CCAAAGGAAT CTCTACCTTC TCTCTGAGAA
  GTTATGAGCA GCACCGCCAC TTAGAGCCTG CAGAGAACTC TGGGGAAGCC AAGGAAACCC
  Y
  CAGTTTAAGA AAGACAGACA GACATTCAGA AAGATAGACA CTCTCGTGGC TGCACTGGGG
  TTACAGTGGA TCCATCCAGG GGCTGCATTT GCGGCTCTCC CATCCTTCCC TGGTATTGAT
  CCAGAGGACC TCATTGGGAA CAAGGAATGC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss145546315	ENSMUSSNP5086915	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss319993377	CHEV_1_137685189	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs48677625					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135716350 () rs orientation: forward

Symbol	Name	Function Class
Rr419276	regulatory region 419276	319 bp distal
Rr419277	regulatory region 419277	612 bp distal
Rr419278	regulatory region 419278	16 bp proximal
Rr419279	regulatory region 419279	335 bp proximal
Rr419280	regulatory region 419280	1122 bp proximal
Rr419281	regulatory region 419281	1393 bp proximal
Tnni1	troponin I, skeletal, slow 1	Intron