rs48679453 SNP Detail

Summary

• ID
  rs48679453
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:15149643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATAGT TCCACTGCTT GCACACTTGG
  Y
  ACTATCAGGT GTAGGGAGGG AGAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146047837	ENSMUSSNP2394609	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss321047419	CHEV_4_15076790	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48679453					SNP	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:15149643 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14054	CpG island 14054	374 bp distal
Necab1	N-terminal EF-hand calcium binding protein 1	within coordinates
Rr100616	regulatory region 100616	within coordinates
Tssr40968	transcription start site region 40968	691 bp upstream
Tssr40969	transcription start site region 40969	671 bp upstream
Tssr40970	transcription start site region 40970	634 bp upstream
Tssr40971	transcription start site region 40971	598 bp upstream
Tssr40972	transcription start site region 40972	573 bp upstream
Tssr40973	transcription start site region 40973	112 bp downstream