rs48679671 SNP Detail

Summary

• ID
  rs48679671
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:67101370 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAAGGTGA GAGATGGCAA
  CAGATTTACA ACTCAAGGAA GCGAAGAAAG AAATTTACCA GGGAAAGTTC TTGCTGTTTG
  GTTCAGCTGA GAAGAACTTT GTAAAGTTGT CTTCTTGGTG GTGGGGGGTG GGGGGCAAGA
  GGAAAGACAG CCTGATATAG AGCAATGGGG TTCAAGATAA AGGAAAAGTT GTAAGATGAG
  R
  TACAATTGCT TCAGGTTCAA TTAAAAACCA GGCTTTCTAG AGTAAGGGTT CAGCTCAGTG
  GGAAAGCAGG TGCCTCATAT ATGCGGAGCC TTGGGTTTCG TGTCCAGCAC CCTAATTTTT
  TAGTCAAAGA GAAAGTAAAT TAATGCAAAG CATCTCCTAT ATGAATTAAT GAAATATGAT
  TGACATGAAT ATGAATTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147343221	ENSMUSSNP2244879	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48679671					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:67101370 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10165	CpG island 10165	652 bp proximal
Gm50164	predicted gene, 50164	within coordinates
Rr355164	regulatory region 355164	1770 bp distal
Rr356406	regulatory region 356406	606 bp distal
Rr393837	regulatory region 393837	1225 bp upstream