rs48679690 SNP Detail

Summary

• ID
  rs48679690
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57414487 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTGACAGT GGAACTGTTC
  CCTTGCTCCA TGGAGAACAA GTTAGTGGAC CGTTCCTGGA GTCAACTGTT GCTCCTGAAG
  GCTGGCCACC GCCTCAGTGT GGGTCTGAGG GCTTATCTGC ATGGAGCCCA GGATGCATAC
  AGAGACTGGG AGCTGTCTTA TCCCAACACC ACCAGCTTTG GACTCTTTCT TGTGAAACCC
  R
  ACAACCCATG GGAATGAGAA CTATCCTTCT TGTGACTCCT AGTTGCTAAG TCCTCAAGCT
  GCTATGTTTT ATGGGGTCTG AGCAGGGGTC CCTTCCATGA CTTTCTCTTG TCTTTAACTG
  GACTTGGTAT TTATTCTGAG CATAGCTCAG ACAAGACTTT ATATAATTCA CTAGATAGCA
  TTAGTAAACT GCTGGGCAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62813018	NES17357895	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48679690					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62813018	NES17357895	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57414487 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9396	CpG island 9396	1373 bp distal
D17Mit252	DNA segment, Chr 17, Massachusetts Institute of Technology 252	313 bp proximal
Gm11110	predicted gene 11110	1545 bp upstream
Rr529281	regulatory region 529281	1075 bp distal
Rr529282	regulatory region 529282	458 bp proximal
Tnfsf9	tumor necrosis factor (ligand) superfamily, member 9	within coordinates
Tssr145376	transcription start site region 145376	844 bp downstream
Tssr148901	transcription start site region 148901	1539 bp upstream