rs48679948 SNP Detail

Summary

• ID
  rs48679948
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:61562037 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGAGAATT ATTTCCAAAC
  AACAATCTCA TATCCAATCA AACTATAAAC CCACTTTGGT GACAGAACAG TGATCGTTTT
  CAGATGTGAA CGGTCAGCCT GCCTCCATCT TTTTTTTTTT AAAGACACAT TTATTCATTT
  ATTCAGCGTC ATGATCAGAC TATTACATTT AGCAATCAAC AGCATGGGTG AAAAAGGTCT
  R
  CAGTAAAACC TTTTGTTGGA ATGCTTTACA CTTTCCACAG AACAGAAAGT AAAAGAACCT
  GTTATGCAAT TAGTCACAAA TAGTGACTGG AGTTTTTGCC CACACACATG AGTATTGTCT
  AAAACATGTC TTCTTTGTAG CAGCTAGGCC CTGCCACCAC TGTGCTTGGC TGAGGTCACA
  AATCTGTTGT AACCTGTAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss62418789	NES17249528	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs48679948					SNP	A	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62418789	NES17249528	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:61562037 () rs orientation: forward

Symbol	Name	Function Class
Gm5461	predicted gene 5461	264 bp downstream
Rr301285	regulatory region 301285	1275 bp distal
Tssr129059	transcription start site region 129059	1305 bp downstream