rs48680299 SNP Detail

Summary

• ID
  rs48680299
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:29894389 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAGG ACTACGGATT CCGGATCTAC
  R
  GGGTGCAGGG GTGCTGGACT GGAGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148668667	ENSMUSSNP3364609	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
ss322132195	CHEV_7_30979983	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48680299					SNP	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:29894389 () rs orientation: forward

Symbol	Name	Function Class
Capns1	calpain, small subunit 1	within coordinates
Cpgi18781	CpG island 18781	1935 bp distal
Cpgi18782	CpG island 18782	923 bp distal
Cpgi18783	CpG island 18783	within coordinates
Gm26810	predicted gene, 26810	within coordinates
Rr380605	regulatory region 380605	1673 bp upstream
Rr400232	regulatory region 400232	1059 bp downstream
Rr400233	regulatory region 400233	71 bp upstream
Tssr65662	transcription start site region 65662	1007 bp downstream
Tssr71698	transcription start site region 71698	1982 bp upstream
Tssr71699	transcription start site region 71699	1856 bp upstream
Tssr71700	transcription start site region 71700	1821 bp upstream
Tssr71701	transcription start site region 71701	1597 bp upstream
Tssr71702	transcription start site region 71702	1145 bp upstream
Tssr71703	transcription start site region 71703	931 bp upstream
Tssr71704	transcription start site region 71704	824 bp upstream
Tssr71705	transcription start site region 71705	802 bp upstream
Tssr71706	transcription start site region 71706	56 bp downstream
Tssr71707	transcription start site region 71707	68 bp downstream
Tssr71708	transcription start site region 71708	82 bp downstream
Tssr71709	transcription start site region 71709	257 bp downstream
Tssr71710	transcription start site region 71710	599 bp downstream