rs48681410 SNP Detail

Summary

• ID
  rs48681410
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:24791401 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATTGACAC TTAACATCAC
  CGTGTATTTT AAATGCTGGT GCATTTTTTA ATTGAAAATT AATTGGATAC TACTTCTTAA
  GGATAACTTA TGCTAAAATG GGGAATACAT GTTTCCTAGT TTTATAGCTG TTTTGATTTC
  CACATCCTGA ATTTCATACC AGAAAGGAAC TGCTGGGATA CATACTTACT GGAAAAAAAA
  W
  TTTTTTTTTT TCTAAAAGAA CAAGCCCTTG GGAGGAGAAG GCGTTTGCTT AGTTCTGTCT
  GCTTTGCTGT GATGCCCCAG ATGGTTTTCA TGTGGCGCAT TCACAGTCAC TTAGGTGGTT
  TAAGGTAGTC AGTCCCTGGC TTATGGTTAC CCTCCCGTTG AGTTCCGAAG CAAGCCAAGG
  TTAAAGCCAC TGCCGTGTTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146998870	ENSMUSSNP759262	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48681410					SNP	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:24791401 () rs orientation: forward

Symbol	Name	Function Class
Arg1	arginase, liver	mRNA-UTR
Tssr92746	transcription start site region 92746	117 bp upstream
Tssr92747	transcription start site region 92747	190 bp upstream
Tssr97085	transcription start site region 97085	10 bp upstream
Tssr97086	transcription start site region 97086	35 bp downstream
Tssr97087	transcription start site region 97087	69 bp downstream
Tssr97088	transcription start site region 97088	127 bp downstream
Tssr97089	transcription start site region 97089	146 bp downstream
Tssr97090	transcription start site region 97090	177 bp downstream
Tssr97091	transcription start site region 97091	568 bp downstream
Tssr97092	transcription start site region 97092	588 bp downstream
Tssr97093	transcription start site region 97093	612 bp downstream
Tssr97094	transcription start site region 97094	628 bp downstream
Tssr97095	transcription start site region 97095	642 bp downstream
Tssr97096	transcription start site region 97096	907 bp downstream
Tssr97097	transcription start site region 97097	1181 bp downstream
Tssr97098	transcription start site region 97098	1329 bp downstream