rs48682784 SNP Detail

Summary

• ID
  rs48682784
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:53378934 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACTTTAAT GGATATGAGC
  TATTCACCCA GATCAGACTC AATGTCAAAA CAGGCGAAAA TACAGCTGTC ACTCTGGACA
  ACAAGATACT CATATGCAAG CAGCTGCTTA ATACACTGCA GAAAGGCAGC CTTTAGTGAT
  ATCTAAAAGG TGTGTCAGTG GCAGCGTTTG AGCATTCTGT AAAGTTAGGG TATGCCACTT
  R
  GAAAGATGAA AGAATACATG TATTTAGCTC TATACTTATA AGAAGCATAG CCTTTAAAAA
  TGTATAATAT AGACAAAAAC AGGGCCTTGT ACATTTCTTT TTTGTTTTAA TAAACCTTTT
  TGTTTATTGA GCATATTCAC GCATATCCAT TCTATTTGAA TATGTTGTAC ATGTACATGT
  ACATACTGTG TGTGTGTTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss137751792	ENSMUSSNP4427055	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss324042715	CHEV_12_54433138	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48682784					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:53378934 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	within coordinates
Rr267616	regulatory region 267616	1535 bp distal
Rr267617	regulatory region 267617	334 bp distal