rs48682869 SNP Detail

Summary

• ID
  rs48682869
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:41723618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTCATTTTT TTAAGAATCC AGGAGGTATG AATGGCCATT
  AATACCACAG AATGCCCACT TAGCATCTCA CAGACTTGAT TGAGAACTAA CCTTAAACAC
  R
  AGGCCATAGA AACCATCCTA GGAACAGGGC ATATAGAAAT GTTTCATTAC CTCGGTCTTC
  TTGTACTGAC AAGCTGCAGG GATCAGAGGA CAGAAGAGTA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61773532	NES17711032	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs48682869					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61773532	NES17711032	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:41723618 () rs orientation: forward

Symbol	Name	Function Class
Gm32184	predicted gene, 32184	within coordinates
Rr403725	regulatory region 403725	1985 bp upstream
Rr478020	regulatory region 478020	765 bp distal
Rr478021	regulatory region 478021	1242 bp proximal
Rr478022	regulatory region 478022	1400 bp proximal
Tssr4053	transcription start site region 4053	1102 bp upstream
Tssr4054	transcription start site region 4054	806 bp downstream
Tssr4055	transcription start site region 4055	562 bp downstream
Tssr119410	transcription start site region 119410	849 bp downstream
Tssr119411	transcription start site region 119411	837 bp downstream