rs48683817 SNP Detail

Summary

• ID
  rs48683817
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:58420690 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGACTGAG GACTTGCGAC
  TCCAAGAGGC CCTGGGTTTG ATGCCAAGCA CTGTCCCTAC GAATTACAAA ATGAGAGGAA
  AAGGAATGGC CTGGTCTCCC TCATCTTCTT GGCTGCTTGA CTGTCATTTT GACTTCTTAG
  AACTTAAGGT TACAGGGATC GAGGACCAAC GGTCCTGAAA CTTTTGCTTC CAACACACTT
  M
  TCGAAAATGA CATAAACTTA AAGGCATACC CGGAGCTCCA CCACCCCCCC CCACCCCCCC
  CCCCCCCGCA ACACACACAC TGGTTAGGTG CAGCCTTCCT TTTCTAATCC GAAGCTCTCA
  ACTTCTGTGG GTTGTGAACT CTTAGAAACA AAAACAAAAA GCAAACTGCA GACATGTACT
  AAGGAATTCA GTCATGAAGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52645696	NES15464188	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48683817					SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52645696	NES15464188	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:58420690 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5724	CpG island 5724	475 bp proximal
Gkap1	G kinase anchoring protein 1	within coordinates
Rr276751	regulatory region 276751	890 bp distal
Rr281488	regulatory region 281488	110 bp proximal
Rr388493	regulatory region 388493	1474 bp downstream
Tssr120072	transcription start site region 120072	1376 bp upstream
Tssr122822	transcription start site region 122822	951 bp upstream
Tssr122823	transcription start site region 122823	1220 bp downstream
Tssr122824	transcription start site region 122824	1245 bp downstream
Tssr122825	transcription start site region 122825	1387 bp downstream
Tssr122826	transcription start site region 122826	1464 bp downstream
Tssr122827	transcription start site region 122827	1491 bp downstream
Tssr122828	transcription start site region 122828	1585 bp downstream
Tssr122829	transcription start site region 122829	1628 bp downstream
Tssr122830	transcription start site region 122830	1957 bp downstream