rs48684302 SNP Detail

Summary

• ID
  rs48684302
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:57606678 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTCATAGG GTAAAGGTGA
  CATGTTCCTT GCTGAAATAT TAACTTAGTA AGAAAGTTTG GTTCTTTCTG ACCGAAATAT
  GTTATTTTAG GAAGAATTTG GGCACTGTGG TATGCTGGAA GAGGGGAGCT TTGCCATTTA
  TAAAGTGCTA TATAAAGTTT TCAAAATTCT TTTGCTTGCA TGCTCTTATT GAATTTGTAT
  Y
  GATCTGTTTT TCTATCACCA TCTATATTCA GGTTTCCCAA AGTGGGTGTC AGGCTTTATA
  CAAGAATTAA CTAGATTTTT GTATCTTGCC TCTTCCTTCC TTCCTTCCTT CCTTCCTTCC
  TTCCTTCCTT CCTTCCTTCC TTCCTTCCTT CCTTCCTTCC TCCCTCCCTC CCTCTCTCCC
  TCCTTCCTCC CTTCTTTCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60303047	NES15808646	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs48684302					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60303047	NES15808646	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:57606678 () rs orientation: forward

Symbol	Name	Function Class
Ctxn3	cortexin 3	within coordinates
Tssr151204	transcription start site region 151204	1126 bp downstream