rs48684328 SNP Detail

Summary

• ID
  rs48684328
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:70118295 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATTGGTAG CCATGGTCTA
  TTTACTGTAT GATTGGACTA AAACCTATGT ATGTGAGTCT GCTCTCTGTC TTGGCCCGGA
  GAGTGTGATT GATAAGGTTT TTGTGAACAA ACTATGCAGA GATGATTGAG TAAACCTGAC
  TTGGCCATTG CCTTTGAAAA TGTCTGAGCT ATATTCCTTT TTCTTTACTG TGTATTATTC
  Y
  TGAGTTGCTA GCAGGTATAG TACCCACACA CACAAGACCG ATTCATTCAT TCATTCATTC
  ATTCATTTGA GACGGTGTTT CTCTGTGCAG CACTGGCTGT CCTGGAACCC ACTTTGTCGA
  TCAGGCTGGC CGTGAATCCA AAGATTTACC TGCCCTGCCT CCCAAGTTCT GGGATCAAAG
  GCGTGCACCA CCACATCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136604708	ENSMUSSNP2575633	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48684328					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:70118295 () rs orientation: forward

Symbol	Name	Function Class
Gm26849	predicted gene, 26849	within coordinates
Gm68934	predicted gene, 68934	315 bp downstream
Myo1e	myosin IE	within coordinates
Rr206677	regulatory region 206677	1494 bp distal
Rr206678	regulatory region 206678	1094 bp distal
Tssr90403	transcription start site region 90403	708 bp downstream