rs48684463 SNP Detail

Summary

• ID
  rs48684463
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:29149023 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGAA CAAGCTGCTG CTTTTTTTTT
  W
  AATAATTTTT AAAAGATTTA TGTAT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss145425690	ENSMUSSNP2476049	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss325352748	CHEV_17_29066994	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs48684463					SNP	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:29149023 () rs orientation: forward

Symbol	Name	Function Class
Gm16191	predicted gene 16191	within coordinates
Rr392487	regulatory region 392487	27 bp upstream
Rr524716	regulatory region 524716	79 bp proximal
Rr524717	regulatory region 524717	483 bp proximal
Rr524718	regulatory region 524718	580 bp proximal
Rr524719	regulatory region 524719	1202 bp proximal
Rr524720	regulatory region 524720	1569 bp proximal