rs48684484 SNP Detail

Summary

• ID
  rs48684484
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:163443313 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTTAAAAA TAGACCTTTG
  TTTATCTGAA ATTCAAATTT AACTGAGAGT TCTATATTTT ATTTGGCAGC CTAGAAGCTG
  GTGACTGGAG AGAAGGGAGG ACTGCAAGTC TCATGACTTG TAACCTGGGG TGGCGGCACA
  CACTCACTGT CTCAGAAGAC AAGGCGCAAG AGTCATGAGT TGGGGGCCAG CTGGTCTACA
  M
  AGGCACCCTC TATTAAAAAC AAACAAAACA GATAAACATA ACTCAGAATT CCCAGGGTAC
  CTCGAACCCC TCTCACATAT TTAGTTTGAC ATCTGGCAAA ATCCATTGTG TCCTTATGTC
  CTTGAAGGTC ACTTCCCACC ACTCTAGGAC TCCACTTATT CATAAGGTAG GGAAAGGATG
  AGGGACTTAA GGTTATCCCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss148206391	ENSMUSSNP6440398	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs48684484					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163443313 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12638	CpG island 12638	605 bp proximal
Rr397464	regulatory region 397464	1146 bp upstream
Rr569431	regulatory region 569431	1686 bp distal
Rr569432	regulatory region 569432	1943 bp distal
Rr569433	regulatory region 569433	within coordinates
Rr569434	regulatory region 569434	431 bp proximal
Rr569435	regulatory region 569435	619 bp proximal
Rr569436	regulatory region 569436	815 bp proximal
Rr569437	regulatory region 569437	940 bp proximal
Tssr21475	transcription start site region 21475	901 bp upstream
Tssr21476	transcription start site region 21476	938 bp upstream
Ttpal	tocopherol (alpha) transfer protein-like	921 bp upstream