rs48684864 SNP Detail

Summary

• ID
  rs48684864
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:19192237 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGAT ATTCAGTAGA TACAGTCCCA
  C
  CAACTCTAAG TACTTCCTTA CCCTA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148777513	ENSMUSSNP4801914	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss322523311	CHEV_8_19142221	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48684864					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:19192237 () rs orientation: forward

Symbol	Name	Function Class
Gm45826	predicted gene 45826	within coordinates
Spag11b	sperm associated antigen 11B	within coordinates
Tssr76531	transcription start site region 76531	1454 bp downstream
Tssr76532	transcription start site region 76532	838 bp downstream
Tssr76533	transcription start site region 76533	781 bp downstream
Tssr76534	transcription start site region 76534	752 bp downstream
Tssr76535	transcription start site region 76535	725 bp downstream
Tssr76536	transcription start site region 76536	383 bp upstream
Tssr80550	transcription start site region 80550	703 bp upstream
Tssr80551	transcription start site region 80551	437 bp downstream
Tssr80552	transcription start site region 80552	612 bp downstream