rs48685225 SNP Detail

Summary

• ID
  rs48685225
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:150841706 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCTCTCGC TCTCTCGCTC
  TCTCGCTCTC TCGCTCTCTC GCTCTCGCTC TCGTTCTCAT CTCATCCCAT GGCAGATGGG
  CGCACTCTGT TGTGGCTACA AAACTCAGGA ACGCCCAGGC TTGCTAATTC AGGTATCAGG
  TGGGATGAAG CCAAGGGCCT CATTTGTTCT GTTTTCATGG CACAAGGGTT TGCTCATAGA
  R
  ATAAAAAGGT GTATACAAAC ATCTGTGCTC ATCTGTTCAT ATTAATAAAG TGAATGCTAG
  ATGGGAGATC AGCACCTTCA CTAGAATGGT AATTAGTTAA AACACAGCTA TTGAACTGGA
  ATTTGTTTGA TTTATTCATC TTATATTCAA GCTATTTGTG TAGAAGGAAG GTCTTTAGAA
  TGGATGGCAG ATAGATTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60858709	NES15999376	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48685225					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60858709	NES15999376	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:150841706 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17112	CpG island 17112	416 bp proximal
Rr625814	regulatory region 625814	939 bp distal
Rr625815	regulatory region 625815	386 bp proximal