rs48685626 SNP Detail

Summary

• ID
  rs48685626
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:130537700 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAAGAGCC CCACTGTCTC
  CATAGCAAGC CCAGGTTTGT AACCACAACG GAATGATTCC ATGCCTGCAT GGTGTCTTAG
  TCCATTTGAA CTGCTATAAC AAAACACCAC AGTCAGGTTG ACTTATAAAC CACAGGAAGT
  GATTTCCCAT AACTTGGAAA GCTGGGAGCA TAATATCAAG GTGATACCCA TGTGTTCTCA
  R
  CCATCGAAAG GATGAATTAA TGCCCTTCGG CCTCTTTTAG AGGAACATTT TAAAGGAACT
  CTTTTAAAGG AACATCTATG AGGGTTTTGT TCCTTTGATA ACCTAACCCA AAGATACCAC
  CTCATTATAT AGCTAATATG GATTCCTTAT GGGAATTTGG GGAAACACAA TACTGAGAAT
  GTAGGAGGAA TATTTGGGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss60841587	NES16009675	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs48685626					SNP	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60841587	NES16009675	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:130537700 () rs orientation: forward

Symbol	Name	Function Class
Caln1	calneuron 1	within coordinates
Rr621536	regulatory region 621536	916 bp proximal
Tssr49069	transcription start site region 49069	760 bp downstream