rs48685733 SNP Detail

Summary

• ID
  rs48685733
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:13250439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCGCCTGC GGGGATGCGG
  CTGGGGTCCA AGAGCTCCGA CACCCGACAC CCCTCGGTCC GCCCCTCCGT CCATCCTCAG
  TTCACCTTCC CTTCCTCTCT TCCTCCCCTC CTCCATCCCC TCCACCCCCT CATGCCCCTC
  GCTCTCCGTG GACCAGAGCG CGTCCCCCGC GCAGCATCGA CTGGCTCAGA CCCAGTCCGG
  R
  GAGGGCGCCC AGCACCCCGC GCGCGCGGCC TCCGCACCCA CCTGGGCACC CGAGCTCGCG
  CCGCCTGCGC GCGCTCTGCG GGATCCATGC GGAGAAGGGC CAGGGACCGC GGGACTCACA
  ACCTCTGCAG CCCCGAGCGC TGGACCCCGG TGCGCCGCTG GCCCCGGGGC GCGCGAGTGC
  TTCCGGCGGG GGCGTGGCCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	MSM/Ms	SM/J
ss148683941	ENSMUSSNP7150526	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		G
ss322505053	CHEV_8_13200439	CHEVERUD	SCREENING_POP	f	SNP		A		G
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	MSM/Ms	SM/J
rs48685733					SNP	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13250439 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
2810030D12Rik	RIKEN cDNA 2810030D12 gene			343 bp upstream
Cpgi20110	CpG island 20110			within coordinates
Gm56825	predicted gene, 56825			203 bp downstream
Grtp1	GH regulated TBC protein 1			Intron
				Noncoding-Transcript-Variant
Rr659872	regulatory region 659872			871 bp distal
Rr659873	regulatory region 659873			86 bp proximal
Rr659874	regulatory region 659874			526 bp proximal
Rr659875	regulatory region 659875			1045 bp proximal
Rr659876	regulatory region 659876			1433 bp proximal
Rr659877	regulatory region 659877			1784 bp proximal
Tssr76386	transcription start site region 76386			337 bp upstream
Tssr76387	transcription start site region 76387			507 bp upstream
Tssr80428	transcription start site region 80428			137 bp downstream
Tssr80429	transcription start site region 80429			974 bp downstream