rs48686664 SNP Detail

Summary

• ID
  rs48686664
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170794039 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATAAACTGT AGGTTTATAT AAACCTTTGC TTATCTCCTC
  TTCTCCTTTT CCAATATCTT GACAGAGTCC ACTTACCTTG GACAGTGATG GTGACAGGCT
  K
  GGACTGGTGC AGTGTCCTTC CTAGACTTCC TTTGCAGTAG TAGTCCCCAC TGTGACTGTG
  GTTGGCTTTT GGGATAGAGA AATTACTACT GTAGTGATGA                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60345269	NES15845089	PERLEGEN	MM_PANEL2	f	SNP	G	G	T	T	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48686664					SNP	G	G	T	T	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60345269	NES15845089	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170794039 () rs orientation: forward

Symbol	Name	Function Class
D1Mit147	DNA segment, Chr 1, Massachusetts Institute of Technology 147	1393 bp distal
Fcgr2b	Fc receptor, IgG, low affinity IIb	within coordinates
Rr20521	regulatory region 20521	1362 bp proximal
Rr372438	regulatory region 372438	513 bp upstream
Tssr14956	transcription start site region 14956	659 bp upstream
Tssr14957	transcription start site region 14957	15 bp downstream
Tssr14958	transcription start site region 14958	1734 bp downstream