rs48686754 SNP Detail

Summary

• ID
  rs48686754
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:127546033 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAAG ACCTGAGTGT GGGACCCTGG
  R
  AAGCCAAGTG GGAAAGCTGT GTGGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147538575	ENSMUSSNP795525	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48686754					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127546033 () rs orientation: forward

Symbol	Name	Function Class
D2Dcr72	DNA Segment, Chr 2, Derry C. Roopenian 72	1504 bp distal
Gm10765	predicted gene 10765	402 bp downstream
Mall	mal, T cell differentiation protein-like	277 bp downstream
Tssr20034	transcription start site region 20034	1692 bp downstream
Tssr26137	transcription start site region 26137	1372 bp downstream
Tssr26138	transcription start site region 26138	1554 bp downstream
Tssr26139	transcription start site region 26139	1633 bp downstream
Tssr26140	transcription start site region 26140	1656 bp downstream