rs48687666 SNP Detail

Summary

• ID
  rs48687666
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:90372525 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTGG GTGCATACTT TGTATGCTAC
  S
  GAATGGAGTC ACATGAGTTT ACAAG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss146920500	ENSMUSSNP3103767	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320390964	CHEV_2_90382338	CHEVERUD	SCREENING_POP	f	SNP		G	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs48687666					SNP	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90372525 () rs orientation: forward

Symbol	Name	Function Class
A630073K07Rik	RIKEN cDNA A630073K07 gene	1349 bp upstream
Ptprj	protein tyrosine phosphatase receptor type J	Intron
Rr397111	regulatory region 397111	503 bp upstream
Rr560526	regulatory region 560526	483 bp proximal
Rr560527	regulatory region 560527	1909 bp proximal
Tssr25104	transcription start site region 25104	1370 bp upstream
Tssr25105	transcription start site region 25105	617 bp downstream