rs48688957 SNP Detail

Summary

• ID
  rs48688957
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:48953221 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TATCAGTTCT GGGGAGGCTG TTGTTGTCCT GAACTTTTAC
  TGCTGCCCAA GCCAGACAGG AGACTTGAGG TCCGGGTGCC CAGGGTTATG GGTGGGGGTG
  R
  GGGGTACTCT CTGAACACAT TAAACCTTCT GAGGATAGTT AAGGTTTCTG AGAACCTCTG
  GAGAGTCACA TTAGGATTAG AGGACGTGGA GCTGCCCAGT C                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss149216080	ENSMUSSNP4451220	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs48688957					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:48953221 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19143	CpG island 19143	711 bp proximal
Nav2	neuron navigator 2	within coordinates
Rr167850	regulatory region 167850	179 bp proximal
Tssr66792	transcription start site region 66792	348 bp upstream
Tssr66793	transcription start site region 66793	607 bp upstream
Tssr66794	transcription start site region 66794	778 bp upstream
Tssr66795	transcription start site region 66795	808 bp upstream