rs48689236 SNP Detail

Summary

• ID
  rs48689236
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:77469051 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATCTATTT TTTAAAATTG
  AGCTACCCTA GGGATCTGAG ACCTAAGACA CAATTTCAAC TTGTTCTGCC AGTGCTTCTG
  GACAAGTAAA AGCCCAGAAA GGCAGTTACA AAGAACAAGG GGATTGGTCC AAGGGTGTGG
  GCAGCAGGTG CTGGGAAGTG CATAAAGAGA GACAACTCAC CCTTAGTAGT TGGGAATGGA
  Y
  CTTATCAACT GGGACTTACC CTAGACCCTG GAGTTTGATA GCAGTGAGTC TGAGATCAGC
  TTGTGGATGA AACCCTGGGG CCACTATGAG TCATTCACTT CCCAGGAACT CAGGAGCTGT
  GAAGTGTATG TGATACCCAC ACTATATCTC TTCAGTTGAG GTGGTTAATA CTCAGGAGGC
  CTTATAAGTA AAAGGATAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61429703	NES16809434	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48689236					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61429703	NES16809434	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:77469051 () rs orientation: forward

Symbol	Name	Function Class
Gm69950	predicted gene, 69950	within coordinates
Rr212289	regulatory region 212289	within coordinates
Rr383632	regulatory region 383632	1950 bp upstream