rs48689344 SNP Detail

Summary

• ID
  rs48689344
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:35931307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTT CTGCAGCTGC CTGTATCACT
  M
  TATTACCAAA GAACTTGGGA AGCAT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss131955109	ENSMUSSNP1965614	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	A
ss323639162	CHEV_11_35853982	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48689344					SNP	C	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:35931307 () rs orientation: forward

Symbol	Name	Function Class
D11Mit108	DNA segment, Chr 11, Massachusetts Institute of Technology 108	1300 bp proximal
Rr240121	regulatory region 240121	within coordinates
Rr243856	regulatory region 243856	1840 bp distal
Rr243857	regulatory region 243857	363 bp proximal
Tenm2	teneurin transmembrane protein 2	within coordinates