rs48689773 SNP Detail

Summary

• ID
  rs48689773
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54361072 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGAGAGAG AGGGAGAGAG
  AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AAACATGCAT
  CTCAGAAGAA CCTGAGAGGA TTGTACCTGC TCCAGAGAAT CAAGTCAAAC TGTAGAAATG
  ACAGAGTGGG ACAGCTCAGC AGAGTCAGGA TGAATGTGTG CTCAGGTGAT CCATCCTATA
  R
  CAGTGGCTCC AGATTTAAAT AATGTTGACC TTCCCTCGGC CAGATGTCTG TTCCTGGGCC
  AGCGCAGAAT GAACTCAGTG TCCTGGTCAG GGAGCATGAA GCCAGAATAA GTAGACATTC
  ACTACAAGTG TGTCAGTCAG CACAGTCCTC TGTGGAAGGA AGGTGTCTAG ACACCAGATA
  CTCCTGTCAA CTTGGTCAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss62394232	NES17237455	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs48689773					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62394232	NES17237455	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54361072 () rs orientation: forward

Symbol	Name	Function Class
A430107P09Rik	RIKEN cDNA A430107P09 gene	within coordinates
A630038E17Rik	RIKEN cDNA A630038E17 gene	within coordinates
Gm30275	predicted gene, 30275	within coordinates
Rr292699	regulatory region 292699	1272 bp distal
Rr297183	regulatory region 297183	528 bp proximal
Tcra	T cell receptor alpha chain	within coordinates
Tcrd	T cell receptor delta chain	within coordinates
Trdd2	T cell receptor delta diversity 2	1374 bp downstream
Trdj1	T cell receptor delta joining 1	427 bp downstream
Tssr125530	transcription start site region 125530	1711 bp downstream
Tssr125531	transcription start site region 125531	1692 bp downstream
Tssr125532	transcription start site region 125532	1679 bp downstream
Tssr125533	transcription start site region 125533	1575 bp downstream
Tssr125534	transcription start site region 125534	1482 bp downstream
Tssr125535	transcription start site region 125535	1468 bp downstream
Tssr125536	transcription start site region 125536	1431 bp downstream
Tssr125537	transcription start site region 125537	1387 bp downstream
Tssr125538	transcription start site region 125538	1367 bp downstream
Tssr125539	transcription start site region 125539	456 bp downstream
Tssr128533	transcription start site region 128533	within coordinates
Tssr128534	transcription start site region 128534	1798 bp downstream