rs48690109 SNP Detail

Summary

• ID
  rs48690109
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:58665318 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C ACCTGGTTCA TGTGGAAGCC ATAACAATTC AGGTACCCTG
  GAACTTGTAG TTACAGATGG TGGTGAGCTG CCATGTGGCT TCCGACCTAG CTCTCCAGTC
  Y
  TTGTAATCCA GTTCTGAGTG ACCTAATTTA TATACTAATT TATATGCCTT CGTCTTTCTC
  TTCTCAAGTC ACTTAATAAC TATTGGTTCT AAACTATTAA T                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	MSM/Ms
ss146566725	ENSMUSSNP3314152	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	MSM/Ms
rs48690109					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:58665318 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11111	CpG island 11111	601 bp distal
Pnlip	pancreatic lipase	within coordinates
Rr361109	regulatory region 361109	1718 bp distal
Rr365894	regulatory region 365894	83 bp proximal
Tssr157271	transcription start site region 157271	1821 bp downstream
Tssr157272	transcription start site region 157272	1805 bp downstream
Tssr157273	transcription start site region 157273	658 bp downstream
Tssr157274	transcription start site region 157274	655 bp downstream
Tssr157275	transcription start site region 157275	623 bp downstream
Tssr157276	transcription start site region 157276	597 bp downstream
Tssr157277	transcription start site region 157277	364 bp downstream
Tssr157278	transcription start site region 157278	250 bp upstream
Tssr157279	transcription start site region 157279	267 bp upstream
Tssr157280	transcription start site region 157280	283 bp upstream
Tssr159961	transcription start site region 159961	1716 bp upstream