rs48691088 SNP Detail

Summary

• ID
  rs48691088
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:48819733 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGGATGC AAAATGAAAA
  CCATTAAAAG TGTTTCCTTG CAAGTGCTTT GTTTTTGTTT TTGTTTTTGT TGTTTTACAG
  GGAAAGGGCA TATTGATCTC CTTCTACTAG GACTGTCAAG GTATTTTAAA CCTTAGCCAG
  CTAAGTTTTT CTAGGAAAAC ATCTGTCTGA GATGTCAGAG GCATCACAGT ATCACTAAGT
  R
  CATTTCTAAA GTAAACAGGG TGGGGTTCCT GGAGCCTTGA CAGTGGGCTC AGCACTGCCT
  TCTGAGTTTC TATGATACTG CACTGCTTGG GGGAGAGTTT TCTCCACCGG CCTGCAGCTT
  CCACTCAAGT ATTTGCAGCC CTTGGCACCA CACTGCCTCT TAAGGCATTC TAATTTCCAT
  TGTTATCACA AAGAACCATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146280736	ENSMUSSNP1730772	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48691088					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:48819733 () rs orientation: forward

Symbol	Name	Function Class
Gm52718	predicted gene, 52718	within coordinates
Rr376450	regulatory region 376450	1924 bp upstream