rs48692045 SNP Detail

Summary

• ID
  rs48692045
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:83329669 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAT GGTACCTAGC GGCCAGTTGG
  Y
  TGTCTTCTTG CTATGACAAA TCCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss132469259	ENSMUSSNP3360682	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss323767165	CHEV_11_83252345	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs48692045					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83329669 () rs orientation: forward

Symbol	Name	Function Class
1700020L24Rik	RIKEN cDNA 1700020L24 gene	Intron
Mmp28	matrix metallopeptidase 28 (epilysin)	1925 bp downstream
Rr452957	regulatory region 452957	1313 bp proximal
Rr452958	regulatory region 452958	1654 bp proximal
Tssr3609	transcription start site region 3609	1116 bp downstream
Tssr103697	transcription start site region 103697	1192 bp downstream
Tssr103698	transcription start site region 103698	1172 bp downstream
Tssr103699	transcription start site region 103699	1135 bp downstream
Tssr103700	transcription start site region 103700	1125 bp downstream
Tssr103701	transcription start site region 103701	1110 bp upstream
Tssr103702	transcription start site region 103702	1554 bp upstream