rs48693684 SNP Detail

Summary

• ID
  rs48693684
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:55067346 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TGACCAGCCA TTAGATACGG TAGAATACTT CTCTTAACAG
  GCAGCTCAAG GGAATAGTAT AGGGTCACAA GCAATGTTAA GTCCTGATCT ACAATAAAGC
  C
  CAGTTCTTTT CTTGAGAGAA ACATAATTCT GCCAAATGGG TAAGATGACC CCAGGTAACA
  ACTATTTGAA AAAGTACAAC ACTGGTGCAC TTAAAATAAT T                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss149126480	ENSMUSSNP6808967	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J
rs48693684					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:55067346 () rs orientation: forward

Symbol	Name	Function Class
Cpgi259	CpG island 259	442 bp distal
Gm71172	predicted gene, 71172	within coordinates
Rr371303	regulatory region 371303	within coordinates
Sf3b1	splicing factor 3b, subunit 1	706 bp upstream
Tssr6707	transcription start site region 6707	1811 bp downstream
Tssr6708	transcription start site region 6708	587 bp downstream
Tssr11708	transcription start site region 11708	781 bp upstream
Tssr11709	transcription start site region 11709	703 bp upstream