rs48694507 SNP Detail

Summary

• ID
  rs48694507
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127762632 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGGGCACCA GGCTCACACA
  CTGTGCACCT ATCTACACAC AGGCAAAACA CTCATGTATA TAAAATAAAA ACAAGTACGT
  CAGTTTGACC CATGTGCTCG GGCAGAACAT TATGGTAACA GGGACTTGTG GTGCATTGTG
  GGACATACCG GAAGCAGAGA GGTCTTGCAC CGACTTTCTC CCGTGCCACC TCAGTTCCCC
  Y
  TGGGTTCCTA CCCCATGCTG GGGCGCTGCT CACATTTGCG CTGGGGCTTC CCCACTCGTG
  CGAATTCCAC CTGGAAATTC CCTCACGGAC ACACCCAGAG TCTGTGCCGC ACCGGCCTCC
  CAGGGATTCT AAATGCAATC AAGCTGGCAG TGAAGACGAT CCACCACACA TTTAGGATCA
  AGTTATTTCT GTGCCGAACG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss135876629	ENSMUSSNP2567404	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320958781	CHEV_3_127671901	CHEVERUD	SCREENING_POP	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs48694507					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127762632 () rs orientation: forward

Symbol	Name	Function Class
Gm35667	predicted gene, 35667	1938 bp upstream
Gm65460	predicted gene, 65460	within coordinates
Rr52	regulatory region 52	998 bp proximal
Rr584913	regulatory region 584913	1991 bp proximal