rs48694574 SNP Detail

Summary

• ID
  rs48694574
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:145283109 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G GAGGCAGAGG CAGGTGGATT TCTGAGTTTG AGGCCAGCCT
  CGTCTACAGA GTGAGTTCCA GGACAGCCAG GGCTATACAG AGAAACCCTG TCTTGAAACC
  C
  CCCCCCCCAA AAAAAAGAAA TTAAACTAAT CCTTACCTTC ATATATCTGA TCAGGAAGCA
  CAGAATGACC TTGCACATGT CCAGTAGAGA AAAGATAATT T                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	MSM/Ms
ss147865380	ENSMUSSNP6009617	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	MSM/Ms
rs48694574					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:145283109 () rs orientation: forward

Symbol	Name	Function Class
Rr377362	regulatory region 377362	within coordinates
Rr398684	regulatory region 398684	1410 bp upstream